YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC17A3.05c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSREEALR CIGLARKYLN AGEYDKALKF ANKSLRIHAT TEGEDFVKQI EKQKLTGSPN  60
   61 PQATPKQENK SNFFSEKQSV RENGNSSAGE KKQKWTSEQH LLVQKIIKYK NHQYYEILDL 120
  121 KKTCTDTEIK KSYKKLALQL HPDKNHAPSA DEAFKMVSKA FQVLSDPNLR AHYDRTGMDP 180
  181 ESRASAASSS FSSNAGGHPG FSAYPQANMS PEDLFNSFFG DQFFSGPGTF FFGGGPGIRV 240
  241 HQFGGRPRNF ARRQQAQDMP PKSIFYQLLP LIVVILFAFL SNFSWSDSTS VNTRYSFQQN 300
  301 YKYTVPRTTA KHNIPYYMSQ KDLDKLSSRD IRRLNEKVEH TYTQNVHNAC LREQQIKEDE 360
  361 IRRAQGWFFP DKEALKKAKE LRLPNCEELN RLGYRTYSNS YYF

Type	Start	End	Confidence
Non-Cytoplasmic	1	222	0.79
Transmembrane Helix	223	243	0.85
Cytoplasmic	244	263	0.90
Transmembrane Helix	264	285	0.90
Non-Cytoplasmic	286	403	0.95