YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC126.08c
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFSVKNVFL LGIFGFVLGA LAETSHLERL SLEAPYINHG MRNLWWEYGG STVIDRKNGI  60
   61 FLTQDVQNQQ GWISTRLPTP SSSFEVLFQF RINSESTSLF GDGLAFFLAA ERAKPGPVFG 120
  121 FTDKFNGYGI FIDTYNNHRP GTLFPRVIVM KGDGHTPYDY ENDGKANEIA SCSALNVRGN 180
  181 DYNLGKLKYD KNAKKLRFEI AYQGSSSFIK CFDLNEVELP LTTFMSFSAH TGDLSESHEI 240
  241 ASILSRTITD IDDEGTPEIP AEELKGTTYG QKKGSFKKRL IILLLSLIVI FSIFALRSYQ 300
  301 VQQEKNRRTT VL

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	279	0.98
Transmembrane Helix	280	299	0.91
Cytoplasmic	300	312	0.87