YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC725.05c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSWANIGSN EYLPLKNDRK AYLNQWAKRS GLAIAAICIL GILILAIVKL FCFKAIIFPI  60
   61 VGGSFNNGTN VFQSTVIVIS LDGFRADYLY RGFTPNLLSL AERNVHVPFL IPSFPSITFP 120
  121 NHYTIVTGLY PESHGIVSNN FFDPVTGKQF VNSMPECNKD PTWWDKGEPI WVNAERNNVR 180
  181 SAVHMWPGNE VENHGYRPTY SDGFNFDTTL REKKDRILEW LDLPDKDRPQ LLLAYAPHVD 240
  241 MVGHAFGPDS PELNIIIQEV DIVIGELIEG LKKRNIDKHV NIIFLSDHGM APTSDNRLIW 300
  301 LDNMFNLSAV AHRDAWPLGG FRGESDLDDE YIYESLVNYS RSSLPSAENW NVYSKKDIPS 360
  361 RWHYSNNERI APVWMIPDVG WSLVSMLDHS PELEYEPLGV HGYDNLSPVM RALFIASGSS 420
  421 FKNFKGKKLA PFQNTEIYGI LSHILDLPAQ PNNGTYEGAL PLRRNRNSTK EWLLKDIEQA 480
  481 YSKLI

Type	Start	End	Confidence
Cytoplasmic	1	29	0.87
Transmembrane Helix	30	53	0.86
Non-Cytoplasmic	54	485	0.87