YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COA1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISSKSLDYT RFLPFFAALV RGHCLTVKSP THNCGSGVKT IMDKSSIFLK NRYPISINRF  60
   61 VQQRKTFCGA SVCLHKVLVQ RQFGFEEKSH GLKYKKLFRR NIGTSEKKNR LPDLLELSSS 120
  121 PRRLPILFAA FCLLWGTCAV LAIQYGKQNS NVTQVVMYRV QHSKEAQDLL GSNIDFKYPF 180
  181 PWVPGKLHKR QGFIDINFEV SGSLASGTVH YQSQRFGPIA HWVELDCTLT SNGKTIKIPT 240
  241 GVSKDTQWT

Type	Start	End	Confidence
Cytoplasmic	1	123	0.67
Transmembrane Helix	124	146	0.80
Non-Cytoplasmic	147	249	0.79