YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gaa1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFTFVQIR VFPFLQRHLF FLQLSLTLIG LSWIFILPRN EIIDRLHVSE SALLPGQVNT  60
   61 YFENRYSKTV SSSLTAANTW SHLDASVGTN TMYDDLEQIF TAMGLPTQKQ NYSINIPGSE 120
  121 FNGSNFITTL RAPRGDATES LLLCVPWKDH IGQYNEAGVA LAISLLKYFQ GWSLWSKDII 180
  181 LVIFDDPVYG PSSFLTSYFD QTTPYISYTP LKIRSGSIQA GLSLELVTTE NNSDVLEVLY 240
  241 QATNGQLPNL DLFNTISRIF MQHFNYPLRL QGYDFHANSG SSYTSRLKSL WMGMLTQAVS 300
  301 NVTSAHALFP QYRIDMLTLR MKVKDPFSFD MFRFGQAIES TFRSLNNLLE HLHQSFFFYF 360
  361 ILDHLHFISI GNYMPSILIL AASFMLGAYR HWINHEKKID LWRPFSFWLF SIFCTIAAYY 420
  421 LVSSSTKITV FIFLYLMLTF IGIIFSTFMT SEDAELVLSY DLMSKSLFIS VVSTLNFSLS 480
  481 FVVAILLVPL QFISFRFNRR LSLLFAVLTY FSTFIFLCSL SKILNGPLVP FWLWAKEYEL 540
  541 FNSWLMPSVF MILVLPEIIF SVTSFFSLWN EPSVKTKTKT L

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.54
Transmembrane Helix	18	37	0.93
Cytoplasmic	38	364	0.54
Transmembrane Helix	365	393	0.75
Non-Cytoplasmic	394	400	0.55
Transmembrane Helix	401	423	0.85
Cytoplasmic	424	429	0.51
Transmembrane Helix	430	450	0.93
Non-Cytoplasmic	451	466	0.56
Transmembrane Helix	467	493	0.83
Cytoplasmic	494	500	0.56
Transmembrane Helix	501	524	0.88
Non-Cytoplasmic	525	543	0.57
Transmembrane Helix	544	569	0.80
Cytoplasmic	570	581	0.59