YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC576.17c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.95
Transmembrane Helix	81	97	0.88
Non-Cytoplasmic	98	118	0.77
Transmembrane Helix	119	138	0.94
Cytoplasmic	139	147	0.75
Transmembrane Helix	148	167	0.95
Non-Cytoplasmic	168	174	0.63
Transmembrane Helix	175	196	0.89
Cytoplasmic	197	205	0.70
Transmembrane Helix	206	229	0.88
Non-Cytoplasmic	230	238	0.78
Transmembrane Helix	239	258	0.89
Cytoplasmic	259	308	0.74
Transmembrane Helix	309	332	0.74
Non-Cytoplasmic	333	345	0.81
Transmembrane Helix	346	366	0.88
Cytoplasmic	367	385	0.86
Transmembrane Helix	386	407	0.90
Non-Cytoplasmic	408	412	0.75
Transmembrane Helix	413	433	0.89
Cytoplasmic	434	448	0.76
Transmembrane Helix	449	472	0.80
Non-Cytoplasmic	473	479	0.85
Transmembrane Helix	480	502	0.94
Cytoplasmic	503	525	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDTNDVMHV HSESISPKKN DLDIELGESV VEPHLSNNSI AKLDTYELEE NEDISDYAYK  60
   61 LAGISNEHPA HPQNWGWWKK AYIVLLSTSL QMYVFWTPNF YPGVQDSVME LWHLSSQVSL 120
  121 LGQSMFVLGV ALGPLFLGPL SDLLGRKLVY IGSLIIYVCF CISCALARNY AQLVISMLIM 180
  181 GVVGSTALGN VAGAVADVLG DEDSNWGMYM FIFMCSVASV GSPMGTGVAE NPKLTWRWLY 240
  241 WIDVIVGGFF IILFVFTPET LPAIVIQRYE QKRQGLPVSW FPQFSLKKLA KDTYFVFFMA 300
  301 IKIFFSEPIV SSLGIYNGFV NGLLYFFLQA IWPVYFSIYK MSDMAASCTY MAAMPACVIL 360
  361 LWFEPLQCWL YKRDKRKHQN RLRPEARFIM TLFYVWGFPI GIFMFAFCSK VHIHYIVSLI 420
  421 GLTIFNIADY HIWQAMLLYV TDAYPNVSAS AVAAFELPSN LGAVGFIHLS ALMFSRMNVH 480
  481 WATAVVGFAS LPLIALIYAL YFYGDRIRAR SKLASQRVPI NTAAH