YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC8C9.12c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYAAEDFDY EGLPIGSPMY AHLLAGAFSG ILEHSVMYPV DAIKTRMQML NGVSRSVSGN  60
   61 IVNSVIKISS TEGVYSLWRG ISSVIMGAGP SHAIYFSVLE FFKSKINASP DRPLASALAG 120
  121 ACAITISDAF MTPFDVIKQR MQLPSRKYKS ALHCATTVFR NEGLGAFYIS YPTCIAMSIP 180
  181 FTAIQVATYD TCMSFLNPNA VYDPTSHIIS GGLSGAIASS LTTPLDVVKT LLQTRGSSSI 240
  241 PEVRKCKGSL DVVRFIYNYG GIPSFFKGIR PRMVVAMPAT AVSWAAYEAG KEILIRVSKT 300
  301 SQA

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.70
Transmembrane Helix	19	38	0.71
Cytoplasmic	39	74	0.88
Transmembrane Helix	75	96	0.85
Non-Cytoplasmic	97	113	0.82
Transmembrane Helix	114	137	0.80
Cytoplasmic	138	166	0.83
Transmembrane Helix	167	187	0.71
Non-Cytoplasmic	188	206	0.75
Transmembrane Helix	207	225	0.65
Cytoplasmic	226	303	0.74