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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: EMC1_SCHPO
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.59
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRPLWPLFL TALFLNIYRA ASVLIDEAGK NDFEISLLGK VNDLVYDTKN EYLYAVSQKG  60
   61 LLAKLNASNG DVIWRQSIAP ETSQLNYNPV TNFIITVDKD YLYIWNSKNG ILDRKIELAD 120
  121 GKGKLFEVNK GFVYLNPHTR KFIELDLQAS FSISIERDLQ LDAISFLTYA EKNYVLFKRD 180
  181 GQFVLQALDH NYAVYGPETV LNVPENAQLL VTEKDVIIYS SNGVIYGIHV SMADISQLLI 240
  241 DEYKTFEWSS IPGKRHGYSI TVDSQSTPVT YLFVIIDSEF VLIDEYIHED TEALGYIHME 300
  301 DNQTFSRVFA VANQIKFAPA TVITIPNQLS RPVFRLFTFA EGEISAIVIL DDGTFFSFSN 360
  361 TELVWKREEA LAYAINPSIL PTTLLTSYQK SIQDEENSSV SFLNRWYRHF NQLIDFLKHP 420
  421 HGFTSSSVLD DAFTTKIIIP TSTGSIFCLS SDPKQVHRIL WRYDFNINPE SVESWLLDIS 480
  481 DEDPKFAFVH QWNDAFSFYI LNASDGSVIS QKSRDFKADE FYYVDNISKN LPNQIFAVKD 540
  541 YKVLPLTGDN SIFEKISQEA NSIFVYTSET KVEGFSISAD LTMDVQWSYN LAEGEIVIAS 600
  601 IRRNPHEIVA SFGRVLQNRE VMYKYLNPNL FALFSKCKND LVVYVMDSVT GSIVYQNKHQ 660
  661 GIILFDKVYG VFSENWLVYS YQSDVPNLST KIISVELFEG SHSNEKIDSN EIYSRHNDYR 720
  721 PYAFTKAYIF DREITTLGVT NTPQGITSRD VLLGLSSNQV AMIPQALLSP MRPVLRPNEK 780
  781 ANDASFIPYE PIIPLNDDMV LSYNKRVYGV SQITSGITNF ESTTLVLSTG LDVFFTRTAP 840
  841 SMPYDMLSSH FDKKQLMLTT FGILLAVLLT KPLVKKKQLN TKWYN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle