YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC428.14
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCRIAIRKY SFILCLAVGS VTIYTSEVIG TPLYFVNKEL YNKYIAFTKS FAGILFTALV  60
   61 QLFSPTPVTL TYDPELRNLF YLDRNGCLET IAAERNIVIA NHQLYSDWMY VWWLSYTAKQ 120
  121 HGHVYIMLKN SLKWLPVIGW GMQLFRFIFL SRKWDKDYET MSRHFKFIRN VRDSVSLILF 180
  181 PEGTNLVEST YQRSRVYADK IGVKMPKHLM LPRVRGLFYS ISQLRDSMTY LYDYTFYFSD 240
  241 PSPKKYAADA FSLPKLFFEG VPIKRLHIHV RRFPISEIPT EEDQFTDWLY QRWYEKDKLI 300
  301 DTLLETGNFP GPKKLHTTVR LKHRLEILSL FSVLFTCIVA GLFLKLFISH

Type	Start	End	Confidence
Cytoplasmic	1	9	0.81
Transmembrane Helix	10	31	0.76
Non-Cytoplasmic	32	49	0.72
Transmembrane Helix	50	70	0.63
Cytoplasmic	71	326	0.78
Transmembrane Helix	327	348	0.92
Non-Cytoplasmic	349	350	0.76