YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC144.18
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.91
Transmembrane Helix	13	34	0.87
Non-Cytoplasmic	35	41	0.83
Transmembrane Helix	42	61	0.92
Cytoplasmic	62	78	0.83
Transmembrane Helix	79	98	0.91
Non-Cytoplasmic	99	105	0.70
Transmembrane Helix	106	125	0.89
Cytoplasmic	126	131	0.69
Transmembrane Helix	132	152	0.91
Non-Cytoplasmic	153	163	0.85
Transmembrane Helix	164	183	0.93
Cytoplasmic	184	197	0.89
Transmembrane Helix	198	217	0.89
Non-Cytoplasmic	218	233	0.85
Transmembrane Helix	234	256	0.89
Cytoplasmic	257	263	0.75
Transmembrane Helix	264	285	0.74
Non-Cytoplasmic	286	288	0.65
Transmembrane Helix	289	310	0.88
Cytoplasmic	311	345	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNHMLNRIS KSPILPVVSY CMASILMTLT NKYVLSSPGY NMNFLLLTVQ STVCVAAIGI  60
   61 LKRLKVINYR DFDFREAKFW FPISFLLVAM IYTASKALQF LSVPVYTIFK NLTIIIIAYG 120
  121 EVLWFGGHVT ALTLFSFGLM VLSSIVAAWA DIQSSSFASQ TLNSGYLWMV LNCLTNAAFV 180
  181 LAMRKRIKLT NFRDFDTMFY NNLLSIPVLV ICTLFTEDWS AENIAQNFPP DAKFGVLMAM 240
  241 AISGVSSVGI SYTSAWCVRV TSSTTYSMVG ALNKLPLAIA GLVFFDAPIT FGSVTAILLG 300
  301 FISGVVYAVA KSQQQRQKDP ATILPMTHNP VSASSQSMRD SLSKS