YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YNY3_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKLLLDPAL RNWVLLPIMF VMILIGILRH NATILLQSSP KKLSKEEIRE QRLLQRAYAL  60
   61 RACSNSLLPE SIEARKCFLI ESLKSGKYLK PVDPNAPKAA NPLMDDKTLE GLMESMKGNM 120
  121 LMVVPQTIIM TWINEFFSGF ILLKLPFPLT LRFKSIFQSG VATQDLDVQW VSSISWYFLN 180
  181 LFGLKSVYAL LLGENNAASN ATNEMGMAGF SSAAATAQLI QPGQDISKMM LSEAENVQIL 240
  241 KNESLLVDVE KRLLAQFA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.71
Transmembrane Helix	9	30	0.86
Non-Cytoplasmic	31	258	0.61