YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YF22_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAVTPSDQ GLLPRGPIAL EEFVKPFCDR FGLTKLPRHM HVILLSALFY QIINILSPVI  60
   61 SRHLSTHYAK LSKKTRLNWD AHVVSSVQSI VLICLGYTCL KEVNAFPDKL FGYSVVAGDI 120
  121 YALTAGYFVW DLYITVRYVH ITGIGFVIHA IAALFVITFS YRPYLMYYGP TYLSWELSTP 180
  181 FLNIHYFLDK TNRTGSKFQM INGFILIVTF ICVRIAWGWF SAYSTAIEIL NHINVAPWAL 240
  241 SLFYLAANMS LNCLNLFWVS KMIDAIRRRA HGEKKSTPLQ VTSEYAKKNI

Type	Start	End	Confidence
Cytoplasmic	1	39	0.62
Transmembrane Helix	40	61	0.81
Non-Cytoplasmic	62	80	0.49
Transmembrane Helix	81	100	0.82
Cytoplasmic	101	109	0.44
Transmembrane Helix	110	130	0.88
Non-Cytoplasmic	131	137	0.40
Transmembrane Helix	138	161	0.87
Cytoplasmic	162	199	0.60
Transmembrane Helix	200	220	0.92
Non-Cytoplasmic	221	237	0.87
Transmembrane Helix	238	259	0.94
Cytoplasmic	260	290	0.98