YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1105.08
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.98
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	266	0.99
Transmembrane Helix	267	288	0.94
Cytoplasmic	289	332	0.95
Transmembrane Helix	333	356	0.93
Non-Cytoplasmic	357	364	0.83
Transmembrane Helix	365	386	0.93
Cytoplasmic	387	399	0.87
Transmembrane Helix	400	422	0.91
Non-Cytoplasmic	423	436	0.89
Transmembrane Helix	437	459	0.92
Cytoplasmic	460	479	0.96
Transmembrane Helix	480	503	0.89
Non-Cytoplasmic	504	520	0.79
Transmembrane Helix	521	545	0.91
Cytoplasmic	546	554	0.87
Transmembrane Helix	555	579	0.87
Non-Cytoplasmic	580	595	0.84
Transmembrane Helix	596	619	0.92
Cytoplasmic	620	629	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPSIPSCS FSFVVFVSVL LQTCFSFQLT PLSPKNYPPG ASIDTTVNTI SPFIGDGRGS  60
   61 DIFNYEYYDE RFHFCRPENI AKQSESLGSV LFGDRLYNSP IEIKMLENQD CVPLCASIIP 120
  121 SSDVSFIRDL ISKNYVVNWN IDNLPVATYL EGTNSKNYSL SPGFPLGKNT EKGVILFNHY 180
  181 DIVIEYHTTS SDQHRVVGAY VKPVSKESTL VDGNPVCSSS SNPQYLPEGA DLTLVTSYSV 240
  241 SWKYSDTPWA TRWDKYMHIE SRQIRWIFII HSAIIDTFLI FVVSIILYRT LNRDINKYNS 300
  301 AFVDQEDVQE DFGWKLVHGD VFRPPRRPML FSILLGTGAQ LLFMSSGIVL FAIFGIVAPS 360
  361 RRGSLATATV ALFIISGFVS GYVSALSYKL MQGMLRKRNL LLTPFVVPGF MLAAALFFNM 420
  421 VFWSKSSSST VPFSSWLLLI FLYLLFTVPL SFVGSLIGFR SREFVPPVRT NQIPRQIPSH 480
  481 SIWLSSFPSA IIGGSIPFLV ILIELFSILD SLWFHPLYFM FGFSFFCFGI LVTTCIMVSI 540
  541 ITVYFQLCSE NYNWWWRSFI TPGFCGIYVF IFSVFYWFFK ISSSSLATAV LYFGYSLLIS 600
  601 VLVFFLCGSV GFFGAFLFVN KIYASIKID