YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC16A3.10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.49
Transmembrane Helix	21	39	0.58
Cytoplasmic	40	46	0.76
Transmembrane Helix	47	64	0.84
Non-Cytoplasmic	65	69	0.58
Transmembrane Helix	70	88	0.80
Cytoplasmic	89	94	0.70
Transmembrane Helix	95	115	0.84
Non-Cytoplasmic	116	121	0.72
Transmembrane Helix	122	141	0.73
Cytoplasmic	142	163	0.89
Transmembrane Helix	164	184	0.92
Non-Cytoplasmic	185	223	0.92
Transmembrane Helix	224	244	0.91
Cytoplasmic	245	252	0.88
Transmembrane Helix	253	272	0.70
Non-Cytoplasmic	273	360	0.76
Transmembrane Helix	361	386	0.73
Cytoplasmic	387	407	0.82
Transmembrane Helix	408	431	0.87
Non-Cytoplasmic	432	443	0.74
Transmembrane Helix	444	462	0.94
Cytoplasmic	463	509	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYLIDIPFE YFSSFLGVHP DQLKLLFCFL SAYPFAGILK RLPSAPWIRN LFSISIGLFY  60
   61 LIGVHHLYDG VLVLLFDALF TYFVAAFYRS SRMPWIIFIV ILGHTFSSHV IRYIYPSENT 120
  121 DITASQMVLC MKLTAFAWSV YDGRLPSSEL SSYQKDRALR KIPNILYFLG YVFFFPSLLV 180
  181 GPAFDYVDYE RFITLSMFKP LADPYEKQIT PHSLEPALGR CWRGLLWLIL FITGSSIYPL 240
  241 KFLLTPKFAS SPILLKYGYV CITAFVARMK YYGAWELSDG ACILSGIGYN GLDSSKHPRW 300
  301 DRVKNIDPIK FEFADNIKCA LEAWNMNTNK WLRNYVYLRV AKKGKRPGFK STLSTFTVSA 360
  361 MWHGVSAGYY LTFVSAAFIQ TVAKYTRRHV RPFFLKPDME TPGPFKRVYD VIGMVATNLS 420
  421 LSYLIISFLL LNLKESIHVW KELYFIVHIY ILIALAVFNS PIRSKLDNKI RSRVNSYKLK 480
  481 SYEQSMKSTS DTDMLNMSVP KREDFENDE