YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SIF1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTASEQARL RRERRLNKIK QGGASRINQI LGQNSDDSQS DVRATASEEA VHSETATPVT  60
   61 PMSSGFMEKR DDTFNADQVE YLPSQDYHNL ESSPFKLQCD SPYNVPPENM FNQNPDFANF 120
  121 FQAMLQSAKE GSDTNFQGEN EQIPQATAPL KNLVEKYAHL LAISIVVIVC YFKHLPLLPW 180
  181 TFTVEACLFS IQFVLDRNNG PSYSLLASLA SQLPPPYGAM IRHTTSYVPY FTQLITDACM 240
  241 TIFALGLCCY FYPSLVY

Type	Start	End	Confidence
Cytoplasmic	1	156	0.89
Transmembrane Helix	157	175	0.77
Non-Cytoplasmic	176	232	0.73
Transmembrane Helix	233	254	0.85
Cytoplasmic	255	257	0.57