YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC27B12.09c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQAIAGLAA GTASTLIMHP LDLAKIQMQA SMNQDSKSLF QVFKSNIGSN GSIRSLYHGL  60
   61 SINVLGSAAS WGAYFCIYDF SKRVVMSMTP FNNGEISVLQ TLCSSGFAGC IVAALTNPIW 120
  121 VVKSRILSKR VNYTNPFFGF YDLIKNEGLR GCYAGFAPSL LGVSQGALQF MAYEKLKLWK 180
  181 QRRPTSLDYI FMSAASKVFA AVNMYPLLVI RTRLQVMRSP HRSIMNLVLQ TWRLQGILGF 240
  241 YKGFLPHLLR VVPQTCITFL VYEQVGMHFK TQSSKSQ

Type	Start	End	Confidence
Cytoplasmic	1	55	0.84
Transmembrane Helix	56	78	0.87
Non-Cytoplasmic	79	97	0.85
Transmembrane Helix	98	121	0.91
Cytoplasmic	122	151	0.87
Transmembrane Helix	152	172	0.51
Non-Cytoplasmic	173	188	0.48
Transmembrane Helix	189	210	0.75
Cytoplasmic	211	277	0.48