YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1685.13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGIRQYGVF TWVFRTFQLA IDTIVLALAS ALVNQQTSGG SPGKINFSVA VGSFAILTFF  60
   61 LTAVGRFLPT ILGNPWLIAF YDFVNWVFAL TGGCCIAVAI RVHACDNQKY LDRNHYTQGS 120
  121 MRRCQELKAL CFFLWFMFGL YVASFIVQIF IAKNDTPNYT FRGRGRGKGS GPAVAPRPVM 180
  181 SAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.79
Transmembrane Helix	14	34	0.81
Cytoplasmic	35	44	0.82
Transmembrane Helix	45	68	0.86
Non-Cytoplasmic	69	82	0.82
Transmembrane Helix	83	105	0.86
Cytoplasmic	106	129	0.94
Transmembrane Helix	130	152	0.93
Non-Cytoplasmic	153	183	0.98