YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YKIC_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVGRFLVII AFCFYVLYLE KIIHTRPHKK CDWRSWEQWE STGNPVRIAL VADPQLVDDL  60
   61 TYDYPRPLIG IVKWISDQFL RRHWRYLHKS LKPDITFIMG DLMDTGREFA TEEFKKDYFR 120
  121 MMNVLDPKFT NKLEIYPGNH DIGFGNHAIV KDIQRFESLF GPTSRSIDVG NHTLVIVDGI 180
  181 RLSNNVNPQV YQPARDFLKS FETNKDNSRP RILLSHVPLF RPAINSCGEL REKDDVIKYG 240
  241 LGYQYQNLLL PELSESILKA VEPIAAFAGD DHDYCEVVHN YQVDTREAAT TEYNVKAFSM 300
  301 TSGILYPGYQ LLSLNYPYDN PKADQKSSYQ TKLCILPNQI QIYVWYGASI SIFFALILLR 360
  361 TAIFFFGTDR YSLPLYKTHA RRFSLSTTIH LFKKIVRITL STFISYTWIP FLLFIFLNIF 420
  421 II

Type	Start	End	Confidence
Non-Cytoplasmic	1	341	0.86
Transmembrane Helix	342	364	0.91
Cytoplasmic	365	397	0.83
Transmembrane Helix	398	421	0.86
Non-Cytoplasmic	422	422	0.89