YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC417.10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.91
Transmembrane Helix	63	79	0.67
Non-Cytoplasmic	80	103	0.69
Transmembrane Helix	104	124	0.71
Cytoplasmic	125	131	0.74
Transmembrane Helix	132	150	0.93
Non-Cytoplasmic	151	159	0.54
Transmembrane Helix	160	181	0.85
Cytoplasmic	182	191	0.83
Transmembrane Helix	192	212	0.94
Non-Cytoplasmic	213	221	0.85
Transmembrane Helix	222	244	0.93
Cytoplasmic	245	292	0.90
Transmembrane Helix	293	315	0.84
Non-Cytoplasmic	316	328	0.82
Transmembrane Helix	329	351	0.90
Cytoplasmic	352	357	0.81
Transmembrane Helix	358	378	0.95
Non-Cytoplasmic	379	384	0.82
Transmembrane Helix	385	405	0.94
Cytoplasmic	406	414	0.78
Transmembrane Helix	415	436	0.85
Non-Cytoplasmic	437	450	0.78
Transmembrane Helix	451	470	0.90
Cytoplasmic	471	508	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSISIDEKL KDPESVQNKE ILDVDVGDLS PKGVDAAFNY ALDVDYDEID PETERRLVRK  60
   61 IDCTIFPVMC LVYCIQFLDK TSNSYAVIMG LKEDLKMEGQ MYSWSGTAFY LGYLVFEFPA 120
  121 SLLLQRFPLS KTLCVFLVIW GFLLCMTSVA NYPGFIALRV LLGMMESAAS PGFILLTAQW 180
  181 YKRSEQQLRT SVWVAFNGLG QILGSCMAYG LAKRTSLPMR GWKLIFIICG VLAIFLGFVI 240
  241 LAVVPDNPFK AWFLTEEDRK LVVKRLRANK QGVGNNHFKL YQFKETMLDI RTWIMFVSSV 300
  301 LLNIPNGGIG TFSSLLIKGT MGYDTLQTLL MGLPAGACEF GGLIAFGFLS LFIHKRMVLA 360
  361 TITTCIALIG SCLLSFAGPP RAQLAGYYLL MVSPGAMIVM FAIISSNASG YTKKVTVGVI 420
  421 YLIGYCVGNL IGPQTFKAAD APEYMPAKNT MVGCYAATLV TFPALYYVNW RENKRRDQLA 480
  481 AEGKIEHRPN AEFEDLTDFE NLDFRYTL