YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hut1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.85
Transmembrane Helix	8	26	0.94
Non-Cytoplasmic	27	42	0.86
Transmembrane Helix	43	64	0.92
Cytoplasmic	65	75	0.87
Transmembrane Helix	76	96	0.94
Non-Cytoplasmic	97	105	0.71
Transmembrane Helix	106	125	0.84
Cytoplasmic	126	133	0.77
Transmembrane Helix	134	151	0.94
Non-Cytoplasmic	152	163	0.71
Transmembrane Helix	164	184	0.76
Cytoplasmic	185	195	0.75
Transmembrane Helix	196	217	0.91
Non-Cytoplasmic	218	233	0.81
Transmembrane Helix	234	256	0.85
Cytoplasmic	257	263	0.66
Transmembrane Helix	264	285	0.71
Non-Cytoplasmic	286	289	0.73
Transmembrane Helix	290	311	0.87
Cytoplasmic	312	322	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFMRQLFV CMIGIYGSFL SWAVMQEKII TRPYDGERFS SPALLSLAQS FMTVLCGLLW  60
   61 NWFHGVSARG LLEPKFLGYF SSIAISASLS SYFGYASMFH LSYPTVILGK SCKLLPVIAL 120
  121 HVFVYKRKFP PHKYLIVTMI TAGVSIFSYF QNTSSKGKHA EHDSPIGLLL LFFNLLMDGI 180
  181 TNTTQDKVFG KYKLSSVTMM IAVNLGIACL NGLYLISPFC NQQPLSFINR HPSILKDMLL 240
  241 FACTGSVGQL FIFFTLEKFG SITLVTITLT RKIFTMLLSV FHFHHTVSSI QWLGILLVFL 300
  301 GISLEAGLKI LNNNSTAKKK AS