YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1919.02
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLQRTNQDT GTTTLFKVVI SNTVNYLPKG VWILRNNTID SLSIAKQFRE IKNNINISHL  60
   61 SRENYWVETP FGKVFHSEVV SEEFMQIFID KGNKALNNEE MIFACMSEKG WNVSLETVPN 120
  121 LDIPVGSYET QLGLPVGLHP KLHVHLKNLH KPEDECSLQG FMYIPPTLFI DRYELSNIAE 180
  181 MHADNLGHVL GIWGETDLEA PSYKLNGTGS FFWFDIYTDD GLLQKDYIDT IIPLHTRYQS 240
  241 PLKGQTYLKT SLTNPKFFWN CDTEDKVNDF RFLFSSKNKY TLQNDPTTLS ISIPIADLSY 300
  301 KHVVEWVTNG VAIFSFFYLL LYLWKRFRYA KD

Type	Start	End	Confidence
Non-Cytoplasmic	1	301	0.93
Transmembrane Helix	302	324	0.79
Cytoplasmic	325	332	0.79