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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HRD1_SCHPO
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFILYVLAS LVLFGLSVLL SLYSSANVYS ATVMISQSPV HITIGLNVCL CLFFAIANAL  60
   61 KTLLFGSLQT FELELLYEQF WITLTEIMLA ITVFREAISI SFFMLLSTLM FARVFHSICS 120
  121 FRTERLQIQL TDQRFHIFSR LTCAYFVLSI LDASLIYLCF TSEHLGDKST RMLFVCEFSV 180
  181 LLLNLTIEAS KLCIYLYEAR HLDQVWDEKS TYLFRLEVCR DGLRLLAYSL LFMYQFPYVS 240
  241 VPIYSIRQMY TCFYSLFRRI REHARFRQAT RDMNAMYPTA TEEQLTNSDR TCTICREEMF 300
  301 HPDHPPENTD EMEPLPRGLD MTPKRLPCGH ILHFHCLRNW LERQQTCPIC RRSVIGNQSS 360
  361 PTGIPASPNV RATQIATQVP NPQNTPTTTA VPGITNSSNQ GDPQASTFNG VPNANSSGFA 420
  421 AHTQDLSSVI PRRIALRDGW TMLPIPGTRR IPTYSQSTST TNPSATPTTG DPSNSTYGGP 480
  481 QTFPNSGNNP NFNRGIAGIV PPGWRLVSSN TQSLSTNSAM TSLYQNASSA DNNLGSSLPN 540
  541 VVPLSRGLTQ SNETSNTFPA ASSNISSQLR ELHTKIDELR ETVSNFRADY NSIRTSLNQL 600
  601 EAASGINERI QTTSADSLLN SNGMSGTEGF ENTQTSITTN DNQSSILTSS DQTSPFATDE 660
  661 DRQNSRNVQL ETVDENF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle