YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCPB1C11.03
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	97	0.99
Transmembrane Helix	98	120	0.91
Non-Cytoplasmic	121	143	0.89
Transmembrane Helix	144	161	0.63
Cytoplasmic	162	168	0.53
Transmembrane Helix	169	191	0.84
Non-Cytoplasmic	192	197	0.45
Transmembrane Helix	198	219	0.76
Cytoplasmic	220	228	0.63
Transmembrane Helix	229	249	0.92
Non-Cytoplasmic	250	258	0.65
Transmembrane Helix	259	281	0.92
Cytoplasmic	282	327	0.77
Transmembrane Helix	328	348	0.81
Non-Cytoplasmic	349	365	0.83
Transmembrane Helix	366	389	0.88
Cytoplasmic	390	396	0.76
Transmembrane Helix	397	416	0.94
Non-Cytoplasmic	417	422	0.78
Transmembrane Helix	423	445	0.86
Cytoplasmic	446	453	0.81
Transmembrane Helix	454	475	0.84
Non-Cytoplasmic	476	485	0.87
Transmembrane Helix	486	510	0.87
Cytoplasmic	511	570	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTESIISSRT ASISSKEGYE IRQGSTDSSS LDLEKKENAV DTTIAKPFDS DEDIADVEKA  60
   61 GGKKINNSLI DETFAFMQDA KKLDPLTPKQ ESKLKWKLYI YLLLMLGFLD MMLFIGKATL 120
  121 SYSTILGLFD DVHITSNQYN NLNTLFYVGY IVGQFPGHYI MQTFPLGKFV GLVTFSWSVI 180
  181 VFLHCCAYNY GGLIALRFFL GFTESCLLPA MEATMGMFFT HQEQAFLQPV FWISCLSCGI 240
  241 PAGFIAYGLE FVTKSIAPWK LFMIITGGIT FFLSIFLFFY YPDNPSKARF LTDEEKLYTI 300
  301 DRVRKSTRGG IENKIFKKHQ FIEALKDPIT WLFTFAAFTL MLSNNLAYQQ NLIFTSLNVS 360
  361 DLNSTLVGVA LAGYNTVSAI IATFAMYLIP NQSAYHAMFW MLPSITGGIA FVALPWSNRI 420
  421 GELATMIIAS DFGITYIIAL GWTTATSTGY TKKLTRGLMF MVGYAIANII SPQLWQSRDA 480
  481 PRYYPAWIVQ IVVAWFVTPI IYLVARVILA RRNKQRKELK DKKIAEGSLE TIEKTYVDTV 540
  541 DEFGNPVKVL IDNSMLDLTD MENLNFVYPL