YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	alg3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.66
Transmembrane Helix	72	93	0.76
Non-Cytoplasmic	94	104	0.77
Transmembrane Helix	105	126	0.87
Cytoplasmic	127	145	0.71
Transmembrane Helix	146	167	0.78
Non-Cytoplasmic	168	177	0.67
Transmembrane Helix	178	201	0.83
Cytoplasmic	202	210	0.73
Transmembrane Helix	211	233	0.92
Non-Cytoplasmic	234	263	0.78
Transmembrane Helix	264	284	0.87
Cytoplasmic	285	316	0.63
Transmembrane Helix	317	339	0.80
Non-Cytoplasmic	340	346	0.53
Transmembrane Helix	347	369	0.68
Cytoplasmic	370	376	0.32
Transmembrane Helix	377	400	0.78
Non-Cytoplasmic	401	406	0.31

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVETRNSF NPFRVLFDLG SYGWLHPSRL LLLEIPFVFA IISKVPYTEI DWIAYMEQVN  60
   61 SFLLGERDYK SLVGCTGPLV YPGGHVFLYT LLYYLTDGGT NIVRAQYIFA FVYWITTAIV 120
  121 GYLFKIVRAP FYIYVLLILS KRLHSIFILR LFNDGFNSLF SSLFILSSCK KKWVRASILL 180
  181 SVACSVKMSS LLYVPAYLVL LLQILGPKKT WMHIFVIIIV QILFSIPFLA YFWSYWTQAF 240
  241 DFGRAFDYKW TVNWRFIPRS IFESTSFSTS ILFLHVALLV AFTCKHWNKL SRATPFAMVN 300
  301 SMLTLKPLPK LQLATPNFIF TALATSNLIG ILCARSLHYQ FYAWFAWYSP YLCYQASFPA 360
  361 PIVIGLWMLQ EYAWNVFPST KLSSLIAVCV PLITILKLYT SDYRKP