YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI2_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEVCAAPAP KKMVAKSLVL NTFRKASVKE VVELKKPWKK VLWRKQDYPD NFIDESFLNG  60
   61 LQRNVNIQVT DFWSLVADSL PVSQHLSSVV IFASVFVSIY RNQLSCALVG FVSNVSAVAA 120
  121 FILWDFVLRK PCNNRTFPNY MGIVKSCILI VLTLAGLSPI LMSLTKSTSP DSVWAIAVWL 180
  181 FLANVFFHEY TTETIRPHVR LHNSLSTNAA LSASVVLASR LEKSINVFFF ILFAVHWFAL 240
  241 FPIFRKYIHV FSFYADMLMT LVLIISAYIA LNAVASVVIA FVFLSLIFFI SFICPIWFIK 300
  301 LQRFKNEIHG PWDIALPKLG PSKG

Type	Start	End	Confidence
Cytoplasmic	1	81	0.82
Transmembrane Helix	82	100	0.75
Non-Cytoplasmic	101	106	0.69
Transmembrane Helix	107	128	0.92
Cytoplasmic	129	140	0.83
Transmembrane Helix	141	163	0.88
Non-Cytoplasmic	164	171	0.73
Transmembrane Helix	172	191	0.88
Cytoplasmic	192	198	0.80
Transmembrane Helix	199	218	0.70
Non-Cytoplasmic	219	224	0.65
Transmembrane Helix	225	244	0.90
Cytoplasmic	245	249	0.76
Transmembrane Helix	250	271	0.87
Non-Cytoplasmic	272	276	0.73
Transmembrane Helix	277	299	0.92
Cytoplasmic	300	324	0.91