YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1685.07c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.91
Transmembrane Helix	19	40	0.90
Non-Cytoplasmic	41	47	0.82
Transmembrane Helix	48	71	0.92
Cytoplasmic	72	91	0.90
Transmembrane Helix	92	118	0.81
Non-Cytoplasmic	119	135	0.90
Transmembrane Helix	136	156	0.89
Cytoplasmic	157	165	0.82
Transmembrane Helix	166	186	0.95
Non-Cytoplasmic	187	201	0.90
Transmembrane Helix	202	223	0.88
Cytoplasmic	224	235	0.87
Transmembrane Helix	236	261	0.84
Non-Cytoplasmic	262	279	0.86
Transmembrane Helix	280	301	0.90
Cytoplasmic	302	321	0.92
Transmembrane Helix	322	344	0.89
Non-Cytoplasmic	345	350	0.80
Transmembrane Helix	351	374	0.92
Cytoplasmic	375	393	0.90
Transmembrane Helix	394	416	0.92
Non-Cytoplasmic	417	420	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGYSPLSSG PADVHIGKAG FFSSVINLAN TILGAGILSL PNAFTKTGLL FGCLTIVFSA  60
   61 FASFLGLYFV SQCAARLPRG KASFAAVAKH TFPSLAVVFD ASIAVKCFGV AVSYLVIVGD 120
  121 LMPQIAPSLG LSSPMFLRRQ TWIVFALFVL TPLSFLKRLD SLRHTSVISL IALCYLVFIV 180
  181 LYHFIIGDTV KGEIRYFVPE SGFGYLSVLP VFVFGFTCHQ NAFSVINEVR NFSQGFVNFT 240
  241 MFTAIISSTL LYLLVAITGY LSFGSLASGN IIAMYDNTSI WIIGGKLAIV VLVLFSYPLQ 300
  301 CHPCRNSVYQ AIRRSYSAHD MSDGYHAVIT LCILLFTHSL ALLLSSLEMV LAFVGSTGST 360
  361 FISFILPGSL YYFFSHKVAS PGNSSPLQLR ISRAFAAGLA IYGTVVMILC LNINIAKLSH 420
  421