YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TCD_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLQVEVFF LFDFTSIMAG FKVPSWITYK SFWIAVSSSV TTACVILGTL EFRKHRSIRR  60
   61 LQSMIVPEAG KSIQLSSSGV PIEIYDAGEE DEGISKGVPY DENLIREQLA RNYAFFGEDG 120
  121 MERLRNSFVI VVGCGGVGSW VINMLARSGV QKIRIVDFDQ VSLSSLNRHS IATLQDVGTP 180
  181 KTLAIKKAIK KFAPWIEVDA RNALFNPDSA DDLLSGNPDF VIDAIDNIQT KVDLLSYCYN 240
  241 HKLPVIASTG SACKSDPTRV NIADISATSE DPLSRATRRR LRLLGIMEGI PVVFSTEKPD 300
  301 PRKASLLPLS EEEFEKGDVD ELSALPEFRA RILPVIGPMP GIFGLTIATY VLTSIAKYPM 360
  361 DPISTMTRPR LYEEAVKRLH AEARKAGVNL DKTFNASEMS YIIEEVYVGR SALPPHESQK 420
  421 VTVVRWNPQL PFDHTNLVAM TRNEARYHED NVLAKNVDPS TVYGKDVIEV VHSFLRRLRM 480
  481 WEMLY

Type	Start	End	Confidence
Cytoplasmic	1	7	0.58
Transmembrane Helix	8	26	0.56
Non-Cytoplasmic	27	31	0.69
Transmembrane Helix	32	52	0.91
Cytoplasmic	53	126	0.92
Transmembrane Helix	127	146	0.79
Non-Cytoplasmic	147	485	0.77