YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC227.03c
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDDSLKDAI AGGAAGLASS LVVAPLDVVK TRKQAQKAFY STGGGKNTMV LGGTLSSMRT  60
   61 IFHNEGIAGL YRGVGPMMLG YLPSWSIYFV VYEKCKVLFG VNKKYTSLHE IDSSKVGIKA 120
  121 SLDSSDKQFY RYWGGQIFSA VIAGAASVTL TNPIWVVKTR LVTQSHPRAS SFVDKIAAAT 180
  181 TVQFRNLQTD APSVKWRMPR FWLKRRTNVK SSPSQHPVNP PTGPACSPAY NNTFDAFRKI 240
  241 YKYEGLAAFY RGLFPSLFGT LHVGIQFPLY EYFKSFLDDF FGKKSNFHIV LAATLSKIAA 300
  301 STVTYPHEVL RTRLQSLDAP THNSATLLIR DIWRSEGWRK YYSGMATNFI RTIPASSVTF 360
  361 LSFEIVRKWL N

Type	Start	End	Confidence
Cytoplasmic	1	67	0.64
Transmembrane Helix	68	89	0.65
Non-Cytoplasmic	90	136	0.79
Transmembrane Helix	137	156	0.84
Cytoplasmic	157	246	0.86
Transmembrane Helix	247	266	0.69
Non-Cytoplasmic	267	286	0.76
Transmembrane Helix	287	305	0.43
Cytoplasmic	306	371	0.48