YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBP26C9.03c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTASITEIDS ISEESNVESV SHLQHSPSFE KKGADFSISL NEKKDFASPI TEEIPSPDGI  60
   61 ATPEPETKKK LSFGARVWDL ICSPGRQHDV CVAAPTQLVR SCDDYANSAS TLVTNDDGTK 120
  121 TKVDSDEKKH KHKNVRDYIR FKHVDIGGRI FDLITRLAGT SFTFILMLII LIVWAIVGGI 180
  181 YRAPDNWQIV MQDGSSIQCY VSDTLLMRQQ QNQHIQVLTM ISQLRSRLLT TSRLLGPVLN 240
  241 DKTKISSVNV ALMKDDVGDA EKLPTENWFD FICNYVSFMV GSIIFLVVYW IGIFIWIGFG 300
  301 RMLGWSDEWQ LYINTAVAVE LTFTSVFLQN VRHRHMKYID RCVTSIFRID SVIEEELRRM 360
  361 MGDKEPNEEI TIKMDKINLG ERSIDYYADL IGSGVGVVVS TCVFVAWIAI GNVMHWDSNW 420
  421 WLIIGTYTGL VGFLDGFVLR NVYFRESSKE ATEIQTLIDE DYALYQKLDL PLPHEHITNY 480
  481 KSTFGGSLSQ WIGWLCALPI SVLFSVFVIL GLIIAAGSLR FNETAQLFCN TPTMIIEGAL 540
  541 LIVLIEAHNI ANLKRRIQFR QIHLRRLTIL KMLAGDNYST TSTV

Type	Start	End	Confidence
Cytoplasmic	1	156	0.54
Transmembrane Helix	157	181	0.85
Non-Cytoplasmic	182	274	0.46
Transmembrane Helix	275	299	0.85
Cytoplasmic	300	385	0.79
Transmembrane Helix	386	410	0.89
Non-Cytoplasmic	411	419	0.85
Transmembrane Helix	420	439	0.94
Cytoplasmic	440	490	0.95
Transmembrane Helix	491	516	0.89
Non-Cytoplasmic	517	532	0.76
Transmembrane Helix	533	551	0.86
Cytoplasmic	552	584	0.91