YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC4C3.09
Protein type:	Globular with Signal Peptide
Type Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFFKRLRLH TRLLLRSKFV LISLILLLNL GLLLGIQIYR DPAFPGSLIS SAAYEFGLHK  60
   61 HGPYYNDNVD DLKRYTFMGL LTLPTSEHDV YFNATRVLVY KLKHHPETKS KYPVHVLVMK 120
  121 GVDEWKIERL RLDGAEIIMV DQIKTEDLIE SGLSIGMGSY RYQYMFTKLS VFEQTQFDKV 180
  181 CILDSDLLVL KNMDDIFDTP YVYESPAEPD MFSFPIFKKP DDEEDYQFSD NFDAYGAPRS 240
  241 EFYPYLLGAC DDRNPGHATP PEESETFNAG LMLVHPSSLH MHRIKKIARY PYMYDDARMM 300
  301 EQSLLNLAYN KYGWFPWTRL DFSYNGVWVT EEDLPYLRAA HGKFWEYDNT EFPQILTAEW 360
  361 HKAFGELLAF HDYVVE

Type	Start	End	Confidence
Signal Peptide	1	35	0.60
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	376	0.99