YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC644.07
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNIGAADAA TSSGISGLLS GNSFLGAGIG LMGFGAGLAI LRRGLISGAS LVKRRMLVSV  60
   61 EIPSKEKSYN AFLHWMSTVP KRYSNQLAVE SNRQLKMPQN AREKPDKQVA NRIFSLVPGP 120
  121 GKHYIKYKKC WIQVERERSN RLQDLTTGTP WETITLTTLS RDRGIFSELL LEAQKFMQSA 180
  181 QKNKTTIYTA WATEWKPFGH PRSKRMLSSV VLESNVKKMI TDDVHDFLRN SQWYDTRGIP 240
  241 YRRGYLLYGP PGSGKTSFLY ALAGELDYDI CVLNLAEKGL TDDRLNHLLS NVPPKAVVLL 300
  301 EDVDSAFQGR ERSGEVGFHA NVTFSGLLNA LDGVTSSDER IIFMTTNHPE KLDPALVRPG 360
  361 RVDVKAYLGN ATPEQVREMF TRFYGHSPEM ADDLSDIVCP KNTSMASLQG LFVMNKSSPA 420
  421 DAVDMAKELP DNPPSTPFSF NVHRKSLSV

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.53
Transmembrane Helix	21	46	0.79
Cytoplasmic	47	449	0.52