YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC14C8.15
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNGNIMKY CLEKGEILIS FLLIALESMF RICTVILPSP LRNWFYEQSK KVYSYFLPEL  60
   61 LVDDNANKLT DARDTIDLCA LHGYDLEEHF VRTTDGYLLG LHRVYKKKKG KIEELNYLPP 120
  121 VLFIHGLMMN SESWVCNLKK EDAIPFALVE QGYDVWLGNL RGNKYSIKNI KFSSQNPKFW 180
  181 DFSLDSIAIF DIPSIVKYIL SVNSFDSISL VGFSQGAILA FAALSIDTEL RNSVRAFIAL 240
  241 APAIAPKKYS GRTVKSIIHA NSQLLYLMFG RNSMLGSAVF WQAVLYPPVF AKIVDLFLRF 300
  301 FLSWTGKNIS ETQKIVAYSH LYSFTSVKCF VHWAQITRRK VLQMYDDSPG FKPSYYTNLN 360
  361 RIARYPIENI RLPITLVYGS NDNMVDIETL KTQLPPLSQC IQIPNYEHLD IIMGDTKKDI 420
  421 VIQQVVEQLN HVIAGDYFES IKEEFGLDTE LVDGVMNHTI

Type	Start	End	Confidence
Cytoplasmic	1	16	0.60
Transmembrane Helix	17	38	0.55
Non-Cytoplasmic	39	460	0.78