YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCS7_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVTSEKCV ILSDGTEYDV TNYLVANKDA ADLLRRYHRQ EVADILNATS KSKHSEAVVE  60
   61 ILKSAKVPLK NKEFSDLVDQ NIGVGYGNEF IVKPTDLDKD FEKNHFLDLK KPLLPQILFG 120
  121 NIKKDVYLDQ VHRPRHYRGS GSAPLFGNFL EPLTKTPWYM IPLIWVPCVT YGFLYACTGI 180
  181 PFSVAITFFI IGLFTWTLVE YTMHRFLFHL DEYTPDHPIF LTMHFAFHGC HHFLPADKYR 240
  241 LVMPPALFLI FATPWYHFIQ LVLPHYIGVA GFSGAILGYV FYDLTHYFLH HRRMPNAYLT 300
  301 DLKTWHLDHH YKDYKSAYGI TSWFWDRVFG TEGPLFNEQG KISTKAK

Type	Start	End	Confidence
Cytoplasmic	1	162	0.86
Transmembrane Helix	163	197	0.77
Non-Cytoplasmic	198	213	0.50
Transmembrane Helix	214	231	0.49
Cytoplasmic	232	240	0.68
Transmembrane Helix	241	259	0.87
Non-Cytoplasmic	260	265	0.75
Transmembrane Helix	266	285	0.94
Cytoplasmic	286	347	0.95