YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC13G1.07
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFFYKYLAL VAIASLMVFI LLFGQIPKLK YTVIGKLNRF FMVTIPYHLH VLDSRYADGR  60
   61 CSAAMRSLSN YVLYKNNPLV VFLYLALITI GIASFFIYGS SLTQKFSIID WISVLTSVLL 120
  121 PYISLYIAAK SNPGKIDLKN WNEASRRFPY DYKIFFPNKC STCKFEKPAR SKHCRLCNIC 180
  181 VEKFDHHCIW INNCVGLNNA RYFFLFLLCT IQLLFHSILR LGYHFNALRD MRQYPSFLRS 240
  241 WWFAIKSEGE LGSVFLISLI CSVLVLCLLG YEFFLVYAGY TTNESEKWSD LAHLVKNRKV 300
  301 YMYYENGSQL LALDKDASND AILVTSMSQI DNIYDNGFYN NFFSLVFPYR HLYSTT

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.64
Transmembrane Helix	7	26	0.94
Cytoplasmic	27	78	0.63
Transmembrane Helix	79	99	0.93
Non-Cytoplasmic	100	106	0.59
Transmembrane Helix	107	129	0.86
Cytoplasmic	130	199	0.70
Transmembrane Helix	200	223	0.81
Non-Cytoplasmic	224	250	0.65
Transmembrane Helix	251	275	0.86
Cytoplasmic	276	356	0.67