YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gwt1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.84
Transmembrane Helix	18	37	0.88
Cytoplasmic	38	47	0.77
Transmembrane Helix	48	68	0.92
Non-Cytoplasmic	69	73	0.76
Transmembrane Helix	74	93	0.93
Cytoplasmic	94	124	0.90
Transmembrane Helix	125	146	0.88
Non-Cytoplasmic	147	155	0.81
Transmembrane Helix	156	177	0.85
Cytoplasmic	178	189	0.87
Transmembrane Helix	190	209	0.93
Non-Cytoplasmic	210	221	0.90
Transmembrane Helix	222	241	0.94
Cytoplasmic	242	249	0.82
Transmembrane Helix	250	270	0.91
Non-Cytoplasmic	271	291	0.89
Transmembrane Helix	292	312	0.86
Cytoplasmic	313	329	0.84
Transmembrane Helix	330	351	0.91
Non-Cytoplasmic	352	360	0.85
Transmembrane Helix	361	383	0.88
Cytoplasmic	384	403	0.86
Transmembrane Helix	404	422	0.95
Non-Cytoplasmic	423	431	0.74
Transmembrane Helix	432	451	0.93
Cytoplasmic	452	459	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYKLEKEAF VSNLTGSSSI ETCGLLLIGI ACNVLWVNMT ARNILPKGNL GFLVEFFIFC  60
   61 LIPLFVIYVS SKVGVFTLCI ASFLPSFVLH VISPINWDVL RRKPGCCLTK KNENTFDRRI 120
  121 AGVTFYRSQM MLVTVTCILA VDFTLFPRRY AKVETWGTSL MDLGVGSFMF SSGTVAGRKN 180
  181 DIKKPNAFKN VLWNSFILLI LGFARMFLTK SINYQEHVSE YGMHWNFFFT LGFMALGVFF 240
  241 FRRSLKKVSY FNLATFITLL HHCLLVLTPF QKWALSAPRT NILAQNREGI ASLPGYIAIY 300
  301 FYGMYTGSVV LADRPLMYTR AESWKRFQRL LFPLCILLVL YLVSNFLSVG VSRRLANTPY 360
  361 VANVAFINMF FLTIYILIDA YLFPSSVPYG SRVPKLLEDA NNNGLLVFLI ANVLTGVVNL 420
  421 SFDTLHSSNA KGLTIMTMYL FIICYMAHWL AQHGIRFRL