YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC725.10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNYQVFTS ISKNWWSASL VPVACGWFIG NSYKPRKDYE NKKQPKFHPP ASAFGPAWTL  60
   61 LYLTMGYASH LAYKADPLMI TNASRNGSIL YIAQLAANFA WMPLFYGLAK PKLALADLGI 120
  121 LTGLVGWLAK TWWPLAPTAS KWLIPYLAWL GYAGYLVSNV TN

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.70
Transmembrane Helix	15	33	0.81
Cytoplasmic	34	50	0.77
Transmembrane Helix	51	71	0.84
Non-Cytoplasmic	72	86	0.73
Transmembrane Helix	87	108	0.81
Cytoplasmic	109	112	0.68
Transmembrane Helix	113	134	0.82
Non-Cytoplasmic	135	141	0.54
Transmembrane Helix	142	160	0.71
Cytoplasmic	161	162	0.53