YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC16E8.02
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYLSRSYSF YAAYHSNPVN IKIHQVCIPL LLLTALVLLH NFVITLINSK LQINVAHLVG  60
   61 LAYQIFYVTL DPLDGLLYSP VLYLFSYILP SKLFTIFSRS LVNRSAAVVH VICWILQFIG 120
  121 HGVFEKRKPA LLDNLIQSLF IAPLFAFLET GPFVGYYPSV VSKIRANIKL KDVGENYPNL 180
  181 SEFLFPPSMV EDAVSGVVED ASQLSYCIRP LRLSDIDDGI VF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.53
Transmembrane Helix	21	44	0.87
Non-Cytoplasmic	45	75	0.47
Transmembrane Helix	76	96	0.73
Cytoplasmic	97	105	0.61
Transmembrane Helix	106	124	0.86
Non-Cytoplasmic	125	138	0.77
Transmembrane Helix	139	160	0.82
Cytoplasmic	161	222	0.86