YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC644.13c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDIGKHNTE IEQDEMENLL RMDPVRSSLD VESRAIEPDN IAGESIVETR FTGGDSLDEP  60
   61 IRVTLFNEFR AIGEKLVYVL YPKNAQVLRD WDLWGPLIFS LVIALALALS TDKIERESVF 120
  121 TVVVALIWFG EAVCSLNIKL LGANISIFQS MCILGYSSFP LMIASIVCAF VPLIFIRIPV 180
  181 IVAMYAWTLF AAMGVLQNSN LSNKKLLAVY PLFLFYFSLA WIIFL

Type	Start	End	Confidence
Cytoplasmic	1	90	0.94
Transmembrane Helix	91	111	0.90
Non-Cytoplasmic	112	118	0.81
Transmembrane Helix	119	141	0.88
Cytoplasmic	142	151	0.70
Transmembrane Helix	152	176	0.83
Non-Cytoplasmic	177	177	0.53
Transmembrane Helix	178	196	0.85
Cytoplasmic	197	205	0.71
Transmembrane Helix	206	224	0.95
Non-Cytoplasmic	225	225	0.90