YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC3E7.06c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.92
Transmembrane Helix	91	110	0.74
Non-Cytoplasmic	111	125	0.74
Transmembrane Helix	126	145	0.83
Cytoplasmic	146	156	0.80
Transmembrane Helix	157	177	0.93
Non-Cytoplasmic	178	184	0.68
Transmembrane Helix	185	206	0.89
Cytoplasmic	207	215	0.82
Transmembrane Helix	216	237	0.91
Non-Cytoplasmic	238	244	0.82
Transmembrane Helix	245	265	0.94
Cytoplasmic	266	284	0.91
Transmembrane Helix	285	304	0.96
Non-Cytoplasmic	305	312	0.85
Transmembrane Helix	313	336	0.87
Cytoplasmic	337	350	0.90
Transmembrane Helix	351	372	0.86
Non-Cytoplasmic	373	390	0.83
Transmembrane Helix	391	411	0.94
Cytoplasmic	412	418	0.82
Transmembrane Helix	419	438	0.94
Non-Cytoplasmic	439	446	0.85
Transmembrane Helix	447	470	0.83
Cytoplasmic	471	484	0.78
Transmembrane Helix	485	506	0.86
Non-Cytoplasmic	507	550	0.93
Transmembrane Helix	551	572	0.93
Cytoplasmic	573	577	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPRTKSPN TNRGQGLRSE RSALLNDSLS SLNGNSSYDS IKDSSKNNKD VAEVNEYPRR  60
   61 PESSVSVVSN SPHRQDAATT NTVSTVSVSK VLPALLLGVV LAALDNTIVA STYTKIGAEF 120
  121 GKFSQVSWTA TAYMISCTAF QPLFGKFCDI YGRKKTLLAA YCVFGIGCFL CGTSRSLWQL 180
  181 VAARAIAGIG GGGMNSTVSI LMSDIVPLKQ RGTYQGIINV FFAIGSSLGG PVGGYFADQY 240
  241 TWRIGFLIQV PLIAIAFLCV YFTLNLPHHN HVSFMTRFRK IDLKGLILLI IGVTTMTCAF 300
  301 TLGGNVREWN DPVVISLLIA SSISYLSFVY VEAFVAFEPL APMDVLTERT CLSSYLCNFF 360
  361 HSVANFGWIY GMPLFFQSIK NEGAEKSGIR LIPMIIGSSL GSLLGGAVIS LTGNYKKITV 420
  421 GSYFFGSVAA LFMLRYGYSN FNWEYAVYPF SGGLGNGIAV TTTLVAIIHA SPSAFQASAI 480
  481 ATSYLFRSNG CVLGVSISSS IVQTVLGIKL RKSLDFDVDE LLHHLRKDIS YVHRLPEEIR 540
  541 QTVLDALLGS IHYSFLFVSF MFFCAFVCSM FIKNRNL