YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DSC3_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSALKKWE IVIRFASSIP DLSLEISDAQ TTTIHSLFKI VRNRIPECRD KQLKMVFQGR  60
   61 LLSPGFTVER AVRGNWQRDE NDDPNIVQKA FIHCIVGPTL TEEELASQDQ AQSGLNSNSE 120
  121 SPDDLQNAQT GETLRGFDRL REAGFTETEV NNLRSQFHRL RGTNLDSLTE DAIREAEDDW 180
  181 IDNGGQNSSA DELDMSYETL LAGVLIGFFG GAIACYFLWE RTMFSLRMQL SILVGIICNF 240
  241 AYGLLHSYRW

Type	Start	End	Confidence
Non-Cytoplasmic	1	198	0.69
Transmembrane Helix	199	219	0.94
Cytoplasmic	220	225	0.65
Transmembrane Helix	226	246	0.89
Non-Cytoplasmic	247	250	0.56