YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hrf1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKLYHPQP THAIPVSNMR VNTRYEPTAG FSGTSVPSVQ AANPSAYLPN SATAQMGFQL  60
   61 GKNAVNAGQE YVEQNFGKWL STTRLHHYFT VTNSYVVAKL LLIIFPWRRR SWARKLRRSE 120
  121 INGSAEGYCP PAEDLNSPDM YIPLMAFTTH ILLLCALAGL QDDFQPELFG LRASKACAVV 180
  181 LVEFLATRLG CYLLNISSQS QVLDLLAFSG YKFVGLILTS LSKLFEMPWV TRFVFLYMYL 240
  241 ATAFFLLRSL KYAVLPESTM AINATITSHQ RSRRIYFLFF IAASQILFMY VLS

Type	Start	End	Confidence
Non-Cytoplasmic	1	84	0.66
Transmembrane Helix	85	107	0.77
Cytoplasmic	108	140	0.85
Transmembrane Helix	141	160	0.81
Non-Cytoplasmic	161	170	0.65
Transmembrane Helix	171	192	0.60
Cytoplasmic	193	201	0.57
Transmembrane Helix	202	222	0.63
Non-Cytoplasmic	223	232	0.69
Transmembrane Helix	233	252	0.91
Cytoplasmic	253	274	0.82
Transmembrane Helix	275	292	0.96
Non-Cytoplasmic	293	293	0.93