YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC4F11.04c
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVIYKFAV FAAVNFFLMS SIVLYFNNEF LMFADRCTKD IIPSEELRYL RQVLNDSIPS  60
   61 KDEPLPTLKL DSLNDISGEP VIPKIIHQTW KTTEVPEGWK GAQQSCIDLH PDYEYILWTD 120
  121 EMSRNFIADN YPWFLPYFDA YPFNVQRADV IRYFVLYHYG GNYIDLDDGC RQRLDSLLYY 180
  181 PVWVRRTDPV GVSNDVMGSV PHHPYFELII QNLEKNAKSY WLPYLTIMLS TGPLSISFLW 240
  241 EKYKRQLPNP PAFYDHIRVL LERDYKFSND SYFTFYEGSS WHNNDAGIIL WANRHLAYVI 300
  301 VAGFCLYFIL SYMFFSKLLD SRYVQRFVTS KRKQPTLPLA LQEDV

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.56
Transmembrane Helix	8	26	0.86
Cytoplasmic	27	219	0.69
Transmembrane Helix	220	240	0.81
Non-Cytoplasmic	241	294	0.67
Transmembrane Helix	295	316	0.90
Cytoplasmic	317	345	0.68