YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC328.09
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHDNIPFPV TFAAGAVAGI SEVLTLYPLD VVKTRMQLSV GKSDYNGTFD CLKKIVKNEG  60
   61 PHRLYRGILP PILMEAPKRA LKFASNDTYS KLWRKVFKRK DSSPALSILT GSCAGFTETF 120
  121 VVVPFELMKI RLQDVKNASK YNGTVDCFTK IVKQERILAL YNGFEATMWR HVVWNAGYFG 180
  181 VIQKIRNSLT PASSRIGEIR NNLIAGTIGG IFGTFLSTPF DVIKSRIQTV PRIAGQVPKY 240
  241 NWAYPALVTV AREEGFTALY KGFVPKVLRL GPGGGILLVV FNSVIEFYKR CLVHNASA

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.67
Transmembrane Helix	8	29	0.57
Cytoplasmic	30	104	0.74
Transmembrane Helix	105	122	0.39
Non-Cytoplasmic	123	298	0.56