YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC36.01c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	141	0.98
Transmembrane Helix	142	164	0.90
Non-Cytoplasmic	165	172	0.78
Transmembrane Helix	173	195	0.88
Cytoplasmic	196	204	0.88
Transmembrane Helix	205	224	0.92
Non-Cytoplasmic	225	234	0.67
Transmembrane Helix	235	253	0.96
Cytoplasmic	254	263	0.77
Transmembrane Helix	264	286	0.91
Non-Cytoplasmic	287	294	0.85
Transmembrane Helix	295	315	0.91
Cytoplasmic	316	370	0.95
Transmembrane Helix	371	390	0.93
Non-Cytoplasmic	391	408	0.87
Transmembrane Helix	409	429	0.95
Cytoplasmic	430	449	0.89
Transmembrane Helix	450	469	0.95
Non-Cytoplasmic	470	477	0.72
Transmembrane Helix	478	500	0.87
Cytoplasmic	501	510	0.70
Transmembrane Helix	511	534	0.80
Non-Cytoplasmic	535	543	0.79
Transmembrane Helix	544	566	0.93
Cytoplasmic	567	580	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESSVNADT PKNTNDVLNG AYQSATTEPE GQYRSATDNP SLYQVPTHGS LYRNLSNSAS  60
   61 AYYPANGNMN SREPANELSD ISSLAEKGEL EPPMAKLLSD PDFQGKQFPT VEAPELFIFE 120
  121 LAPDSPSIAL NWTFWRKMKT TSIYAYASLT IAWGSSVLSP ASATLAKKYH IGMTTSLLNV 180
  181 SLFMLGYCLG PICWAPMSEI TGRKTPLYIG LFLFSVFQIA VATAQDIQTI MICRFFGGYG 240
  241 ACVPLCVVAA AFADMYPNRY RGTAITIFAA VIFVGPLVAP IVGGFLTKSY LGWRWTEYIT 300
  301 SFMGFLSIIL IYLFCEETYL KTITENKVQE YREITGNQLV HARSEEESLS ARDIIMNYLL 360
  361 IPLKMLATEP IVFLVSLYCS FVYAIIYLLL EAYPVIFQEG RHFPLGVSAL PYIGILVGVF 420
  421 IGCGINCLFE PWYFRQVIKA GNKPAPEARL PPMMIGSFLF PAGIFWLAWS GYYTYVHWIV 480
  481 PTLSGLLTGA GILLIFLQCL NYLLDAYLFR AASVFAANVI MRSAVAGGFP LFAVQMFHNM 540
  541 GVGWAGSLLG FIATALIPMP FAFFFFGKKI RAKSKMTAQF