YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1734.09
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.40
Transmembrane Helix	6	20	0.42
Non-Cytoplasmic	21	31	0.76
Transmembrane Helix	32	52	0.92
Cytoplasmic	53	67	0.88
Transmembrane Helix	68	88	0.93
Non-Cytoplasmic	89	94	0.74
Transmembrane Helix	95	114	0.63
Cytoplasmic	115	120	0.56
Transmembrane Helix	121	141	0.89
Non-Cytoplasmic	142	153	0.56
Transmembrane Helix	154	175	0.92
Cytoplasmic	176	189	0.57
Transmembrane Helix	190	208	0.93
Non-Cytoplasmic	209	222	0.52
Transmembrane Helix	223	244	0.61
Cytoplasmic	245	255	0.36
Transmembrane Helix	256	270	0.41
Non-Cytoplasmic	271	283	0.61
Transmembrane Helix	284	303	0.78
Cytoplasmic	304	316	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIASALSFIF GGCCSNAYAL EALVREFPSS GILITFSQFI LITIEGLIYF LLNDVQSLKH  60
   61 PKVPRKRWFV VVVMFFAINV LNNVALGFDI SVPVHIILRS SGPLTTMAVG RILAGKRYSS 120
  121 LQIGSVFILT IGVIIATLGN AKDLHLHVES MTRFGIGFTI LVITQILGAI MGLVLENTYR 180
  181 IYGSDWRESL FYTHALSLPF FLFLLRPIRS QWNDLFAIHT KGFLNLPSGV WYLCFNTLAQ 240
  241 YFCVRGVNAL GAETSALTVS VVLNVRKFVS LCLSLILFEN EMGPAVKFGA LLVFGSSAVY 300
  301 ASARSKPKTN GLKKND