YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SEC62_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSNVPVLK DEDKCKFSMR FTNFLKSRPE LKTKPAILNG KRVYYFRVKR VLRFLTSEAY  60
   61 TPKKYKGFPE ISSREEAIEV LKLLIMNSML VRVDKLPPKQ RKQKLVELQI NRNQDFQDDM 120
  121 HYVWLYEPLP KRVMALAVLF ALVVLALVLF PLWPMFMRKG AWYLSMGGLG VIGLFFVLVI 180
  181 LRFFLFCITA VIVRPGIWLF PNLLADVGFC DSFKPLWSWH NSKSEVKKTR KSKKLSKKAT 240
  241 SPAASATPEK SSTSTTSLKN LRHRNPTVEE VSE

Type	Start	End	Confidence
Cytoplasmic	1	132	0.94
Transmembrane Helix	133	154	0.92
Non-Cytoplasmic	155	163	0.73
Transmembrane Helix	164	186	0.86
Cytoplasmic	187	273	0.82