YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1450.07c
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKENKPRDI VIVGAGVIGL TTAWILSDLG LAPRIKVIAK YTPEDRSVEY TSPWAGANFC  60
   61 SISATDDNAL RWDKITYHRF AYLAKTRPEA GIRFADLREL WEYEPKHDKI RSWNTYVRDF 120
  121 KVIPEKDLPG ECIYGHKATT FLINAPHYLN YMYKLLIEAG VEFEKKELSH IKETVEETPE 180
  181 ASVVFNCTGL WASKLGGVED PDVYPTRGHV VLVKAPHVTE TRILNGKNSD TYIIPRPLNG 240
  241 GVICGGFMQP GNWDREIHPE DTLDILKRTS ALMPELFHGK GPEGAEIIQE CVGFRPSRKG 300
  301 GARVELDVVP GTSVPLVHDY GASGTGYQAG YGMALDSVML ALPKIKLA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.67
Transmembrane Helix	10	27	0.72
Non-Cytoplasmic	28	348	0.96