YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	oma1
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLNKYISNY SRTRAVSCAP VLSYKKCSYR NFNGLLQARF QSNNLSWSNR NRVVYKSFQP  60
   61 NPRDKRFQWI FGALIAGGGV YYFTHLEYVP ISNRRRFNDV SLDFEKRMAQ DAYKEVMSEY 120
  121 GDRMLPSYHP TTLYVSRVLK RIIAVSGMSD LKWELHVIRD PTPNAFVLPG GKVFVFEGIL 180
  181 PMCKGEDGLA AVLAHETAHQ VARHSAEKIA FTRAVSCIVF LAAASLDLSG QLSHFLLNFG 240
  241 LLLPFSRKME TEADYIGLML MSQACFDPNA AKTLWERMDA AEGQMGKALA FASTHPSSKK 300
  301 RIRKIEEWLP EAQVKRETSD CYHETWPMLQ SFKEVHW

Type	Start	End	Confidence
Cytoplasmic	1	66	0.70
Transmembrane Helix	67	86	0.80
Non-Cytoplasmic	87	337	0.78