YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1683.05
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.93
Transmembrane Helix	72	90	0.85
Non-Cytoplasmic	91	101	0.86
Transmembrane Helix	102	124	0.89
Cytoplasmic	125	138	0.81
Transmembrane Helix	139	158	0.92
Non-Cytoplasmic	159	197	0.86
Transmembrane Helix	198	215	0.90
Cytoplasmic	216	228	0.75
Transmembrane Helix	229	251	0.85
Non-Cytoplasmic	252	262	0.91
Transmembrane Helix	263	285	0.91
Cytoplasmic	286	302	0.86
Transmembrane Helix	303	325	0.91
Non-Cytoplasmic	326	347	0.86
Transmembrane Helix	348	366	0.92
Cytoplasmic	367	386	0.88
Transmembrane Helix	387	405	0.92
Non-Cytoplasmic	406	412	0.73
Transmembrane Helix	413	433	0.96
Cytoplasmic	434	461	0.96
Transmembrane Helix	462	485	0.86
Non-Cytoplasmic	486	495	0.89
Transmembrane Helix	496	518	0.87
Cytoplasmic	519	559	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDPKSDEKF DIGISEKNLD VGFGESSSVD VPVKGRFASF LKKLELSSGP EKENIDLRPT  60
   61 PPDRRHYSAL DIIYLWSCNG ISASAFRTGT SYMEMGLSPK QALAALIAGN VFIAMPMTLN 120
  121 GLFGSHYHIP FAVQSRASFG YYFNTLIILL RFIAGLFYYG TNVYTGAECV QTILYAIFKS 180
  181 FRSYKNRLPA DAGITSDFLI SYFVYWVISF PFHLIRPEYL QRFFLIKSIS TYIACFAMLI 240
  241 FLLCNVGSHV VWDQPATVSG RSWSWVFMCA LNSSVAGFST LAVNVNDFTR YVKHPKTPYV 300
  301 QMLILPLVAA VSAPIGIVSG VASKIMYGTA MWDPLQIANN WTSRGGRAAA FFMGLTYLVS 360
  361 MIAQNISDNT VAAANDLLYF FPRYLDIRRA QVIVIIIGAW AIVPWKILQN GTAFLAFLGS 420
  421 LSIFLGPAAG IFVADKFKNH HKYDIDEFYN PSGIYRYNKL GLNWRALIAF LCACVPLIPG 480
  481 MAMSINPSIT MPDGVIHLYY IGYFYSFMTA FLIYWGLNLV FPAKETLLEE AVYPPKSNAE 540
  541 LVDPSTLSGK DKFWYYIDY