YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCT4_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	107	0.99
Transmembrane Helix	108	128	0.94
Non-Cytoplasmic	129	142	0.83
Transmembrane Helix	143	165	0.89
Cytoplasmic	166	173	0.79
Transmembrane Helix	174	192	0.93
Non-Cytoplasmic	193	204	0.64
Transmembrane Helix	205	226	0.89
Cytoplasmic	227	233	0.84
Transmembrane Helix	234	256	0.91
Non-Cytoplasmic	257	266	0.87
Transmembrane Helix	267	286	0.87
Cytoplasmic	287	342	0.93
Transmembrane Helix	343	366	0.87
Non-Cytoplasmic	367	376	0.87
Transmembrane Helix	377	399	0.94
Cytoplasmic	400	417	0.94
Transmembrane Helix	418	438	0.94
Non-Cytoplasmic	439	445	0.80
Transmembrane Helix	446	471	0.82
Cytoplasmic	472	478	0.81
Transmembrane Helix	479	500	0.83
Non-Cytoplasmic	501	510	0.77
Transmembrane Helix	511	533	0.93
Cytoplasmic	534	547	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYIFLITGY KYRHLNLEAY NAKSRAIENE KRYLGNDRNL PFHREREKVE SNPNSSDEED  60
   61 LTSTNNTRSS DNTTSDTEDD SGEDSYQVEW ESGKDPLAPK NWPMWKKIYT LLVASFIAIV 120
  121 ITANSSIFSD GGGIAAQQYH VGATVGDLCS ATFLLGFAAG SVLFAPLSEV YGRLPLYSVT 180
  181 LVIFVVFQIG GGCSKNIWSL VIFRFFHGFF GCTPMSACGG TISDLFNPIQ RTGALLVFCA 240
  241 AAFVGPLVGP VMGGYITESK LGWRWDFWIN MIWAGLTWVI VCFTMPETHS ETLLDFKARY 300
  301 LRKKTNCDKW YNEHEHQRDP AYAIRTALTR GVRLLCTEPI VQAFCMYLVF INILLYICMV 360
  361 GYPLIFYQYG FNAGEVGLAI LGILVGILLG LALTPIIYVH YRRRYEMRDG NICPEDRLFP 420
  421 LFFGSFFIPI ALFWLGWTCY PSVHWAAPMV SGIFLGWGFL YVLAVCYSYL VDCYHEMAAS 480
  481 ALSVATFTRY AAGGGMTIVA RPMYNNLNYH WATSLLAFVG CGLVPIPFIF FFWGRRIRQR 540
  541 SPHAYKG